PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012573564.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 274aa    MW: 31590.2 Da    PI: 8.4732
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012573564.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.41.8e-231053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    + e++snr+vt+skR+ gilKKA+ELS+LCd+++++++fs+tgk
  XP_012573564.1 10 KLESTSNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGK 53
                    679***************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.292153IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-28160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-25293IPR002100Transcription factor, MADS-box
CDDcd002663.44E-25284No hitNo description
PRINTSPR004042.7E-17323IPR002100Transcription factor, MADS-box
PfamPF003196.1E-201154IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRVKLKIKK LESTSNRHVT YSKRKSGILK KAKELSILCD IDILLLMFSP TGKPTLLQGE  60
RGNMEEIIAK FAQLSPQERA KRKMESLEAL KKTFRKLDHD VKIQDFLGSS SQTIEELTHQ  120
MRVLQFQLAE IQQRLSYWNN MEKINNLEHL RQMEDSLRES INRLCLQKEN LGKRQLISLE  180
CANQLPEGMT LPLMMADLQE SQPLSWLLSG DNHQLMLHSE PKYLPFSDNG NKEVECSNDI  240
SLTGYSGYIG NGKLXGWELS TCHNFGSGRW WFLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-14192190Myocyte-specific enhancer factor 2B
1tqe_Q2e-14192190Myocyte-specific enhancer factor 2B
1tqe_R2e-14192190Myocyte-specific enhancer factor 2B
1tqe_S2e-14192190Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012573564.10.0PREDICTED: LOW QUALITY PROTEIN: MADS-box protein FLOWERING LOCUS C-like
SwissprotQ7X9I02e-89AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLB7FM891e-173B7FM89_MEDTR; Putative uncharacterized protein
STRINGGLYMA17G10941.11e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.16e-80AGAMOUS-like 65